rRNA databases
A comprehensive on-line resource for quality checked and aligned ribosomal RNA sequence data.
–> ribosomal RNA sequence data
MUSCLE
Tools > Multiple Sequence Alignment > MUSCLE
https://www.ebi.ac.uk/Tools/msa/muscle/
MUSCLE stands for MUltiple Sequence Comparison by Log- Expectation. MUSCLE is claimed to achieve both better average accuracy and better speed than ClustalW2 or T-Coffee, depending on the chosen options.
–> Multiple Sequence Alignment
Tools > Pairwise Sequence Alignment > EMBOSS Needle
https://www.ebi.ac.uk/Tools/psa/emboss_needle/
EMBOSS Needle reads two input sequences and writes their optimal global sequence alignment to file.
–> Pairwise Sequence Alignment
